https://azure.microsoft.com/en-us/blog/announcing-microsoft-s-coco-framework-for-enterprise-blockchain-networks/ https://opensourcelibs.com/lib/diffnet https://github.com/Messi-Q/GraphDeeSmartContract https://xscode.com/jdlc105/Must-read-papers-and-continuous-tracking-on-Graph-Neural-Network-GNN-progress
Must-read papers and continuous track on Graph Neural Network(GNN) progress
Many important real-world applications and questions come in the form of graphs, such as social network, protein-protein interaction network, brain network, chemical molecular graph and 3D point cloud. Therefore, driven by the above interdisciplinary research, the neural network model for graph data-oriented has become an emerging research hotspot. Among them, two of the three pioneers of deep learning, Professor Yann LeCun (2018 Turing Award Winner), Professor Yoshua Bengio (2018 Turing Award Winner) and famous Professor Jure Leskovec from Stanford University AI lab also participated in it.
This project focuses on GNN, lists relevant must-read papers and keeps track of progress. We look forward to promoting this direction and providing some help to researchers in this direction.
Contributed by Allen Bluce (Dr. Bentian Li) and Anne Bluce (Dr. Yunxia Lin), If there is something wrong or GNN-related issue, welcome to send email (Address: jdlc105@qq.com, lbtjackbluce@gmail.com).
Technology Keyword: Graph Neural Network, Graph convolutional network, Graph network, Graph attention network, Graph auto-encoder, Graph convolutional reinforcement learning, Graph capsule neural network....
GNN and its variants are an emerging and powerful neural network approach. Its application is no longer limited to the original field. It has flourished in many other areas, such as Data Visualization, Image Processing, NLP, Recommendation System, Computer Vision, Bioinformatics, Chemical informatics, Drug Development and Discovery, Smart Transportation.
Very hot research topic: the representative work--Graph convolutional networks (GCNs) proposed by T.N. Kipf and M. Welling (ICLR2017 [5] in conference paper list) has been cited 1,020 times in Google Scholar (on 09 May 2019). Update: 1, 065 times (on 20 May 2019); Update: 1, 106 times (on 27 May 2019); Update: 1, 227 times (on 19 June 2019); Update: 1, 377 times (on 8 July 2019); Update: 1, 678 times (on 17 Sept. 2019); Update: 1, 944 times (on 29 Oct. 2019); Update: 2, 232 times (on 9 Dec. 2019); Update: 2, 677 times (on 2 Feb. 2020).Update: 3, 018 times (on 17 March. 2020); Update: 3,560 times (on 27 May. 2020); Update: 4,060 times (on 3 July. 2020); Update: 5,371 times (on 25 Oct. 2020). Update: 6,258 times (on 01 Jan. 2021).
Thanks for giving us so many stars and supports from the developers and scientists on Github around the world！！！ We will continue to make this project better.
Project Start time: 11 Dec 2018, Latest updated time: 01 Jan. 2021
New papers about GNN models and their applications have come from NeurIPS2020, AAAI2021 .... We are waiting for more paper to be released.
Survey papers:
Bronstein M M, Bruna J, LeCun Y, et al. Geometric deep learning: going beyond euclidean data. IEEE Signal Processing Magazine, 2017, 34(4): 18-42. paper
Jie Zhou, Ganqu Cui, Zhengyan Zhang, Cheng Yang, Zhiyuan Liu, Maosong Sun, Graph Neural Networks: A Review of Methods and Applications, ArXiv, 2018. paper.
Battaglia P W, Hamrick J B, Bapst V, et al. Relational inductive biases, deep learning, and graph networks, arXiv 2018. paper
Zonghan Wu, Shirui Pan, Fengwen Chen, Guodong Long, Chengqi Zhang, Philip S. Yu(Fellow,IEEE), A Comprehensive Survey on Graph Neural Networks, IEEE Transactions on Neural Networks and Learning Systems, 2020. paper.
Ziwei Zhang, Peng Cui, Wenwu Zhu, Deep Learning on Graphs: A Survey, IEEE Transactions on Knowledge and Data Engineering, 2020. paper.
Chen Z, Chen F, Zhang L, et al. Bridging the Gap between Spatial and Spectral Domains: A Survey on Graph Neural Networks. arXiv preprint. 2020. paper
Abadal S, Jain A, Guirado R, et al. Computing Graph Neural Networks: A Survey from Algorithms to Accelerators. arXiv preprint. 2020. paper
Lamb L, Garcez A, Gori M, et al. Graph Neural Networks Meet Neural-Symbolic Computing: A Survey and Perspective. arXiv preprint. 2020. paper
Journal papers:
F. Scarselli, M. Gori, A.C. Tsoi, M. Hagenbuchner, G. Monfardini, The graph neural network model, IEEE Transactions on Neural Networks(IEEE Transactions on Neural Networks and Learning Systems), 2009. paper.
Scarselli F, Gori M, Tsoi A C, et al. Computational capabilities of graph neural networks, IEEE Transactions on Neural Networks, 2009. paper.
Micheli A . Neural Network for Graphs: A Contextual Constructive Approach. IEEE Transactions on Neural Networks, 2009. paper.
Goles, Eric, and Gonzalo A. Ruz. Dynamics of Neural Networks over Undirected Graphs. Neural Networks, 2015. paper.
Z. Luo, L. Liu, J. Yin, Y. Li, Z. Wu, Deep Learning of Graphs with Ngram Convolutional Neural Networks, IEEE Transactions on Knowledge & Data Engineering, 2017. paper. code.
Petroski Such F , Sah S , Dominguez M A , et al. Robust Spatial Filtering with Graph Convolutional Neural Networks. IEEE Journal of Selected Topics in Signal Processing, 2017. paper.
Kawahara J, Brown C J, Miller S P, et al. BrainNetCNN: convolutional neural networks for brain networks; towards predicting neurodevelopment. NeuroImage, 2017. paper.
Muscoloni A , Thomas J M , Ciucci S , et al. Machine learning meets complex networks via coalescent embedding in the hyperbolic space. Nature Communications, 2017. paper.
D.M. Camacho, K.M. Collins, R.K. Powers, J.C. Costello, J.J. Collins, Next-Generation Machine Learning for Biological Networks, Cell, 2018. paper.
Marinka Z , Monica A , Jure L . Modeling polypharmacy side effects with graph convolutional networks. Bioinformatics, 2018. paper.
Sarah P , Ira K S , Enzo F , et al. Disease Prediction using Graph Convolutional Networks: Application to Autism Spectrum Disorder and Alzheimer’s Disease. Medical Image Analysis, 2018. paper.
Sofia Ira Ktena, Sarah Parisot, Enzo Ferrante, Martin Rajchl, Matthew Lee, Ben Glocker, Daniel Rueckert, Metric learning with spectral graph convolutions on brain connectivity networks, NeuroImage, 2018. paper.
Xie T , Grossman J C . Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties. Physical Review Letters, 2018. paper.
Phan, Anh Viet, Minh Le Nguyen, Yen Lam Hoang Nguyen, and Lam Thu Bui. DGCNN: A Convolutional Neural Network over Large-Scale Labeled Graphs. Neural Networks, 2018. paper
Song T, Zheng W, Song P, et al. Eeg emotion recognition using dynamical graph convolutional neural networks. IEEE Transactions on Affective Computing, 2018. paper
Levie R, Monti F, Bresson X, et al. Cayleynets: Graph convolutional neural networks with complex rational spectral filters. IEEE Transactions on Signal Processing 2019. paper
Zhang, Zhihong, Dongdong Chen, Jianjia Wang, Lu Bai, and Edwin R. Hancock. Quantum-Based Subgraph Convolutional Neural Networks. Pattern Recognition, 2019. paper
Qin A, Shang Z, Tian J, et al. Spectral–Spatial Graph Convolutional Networks for Semisupervised Hyperspectral Image Classification. IEEE Geoscience and Remote Sensing Letters, 2019. paper
Coley C W, Jin W, Rogers L, et al. A graph-convolutional neural network model for the prediction of chemical reactivity. Chemical Science, 2019. paper
Zhang Z, Chen D, Wang Z, et al. Depth-based Subgraph Convolutional Auto-Encoder for Network Representation Learning. Pattern Recognition, 2019. paper
Hong Y, Kim J, Chen G, et al. Longitudinal Prediction of Infant Diffusion MRI Data via Graph Convolutional Adversarial Networks. IEEE transactions on medical imaging, 2019. paper
Khodayar M, Mohammadi S, Khodayar M E, et al. Convolutional Graph Autoencoder: A Generative Deep Neural Network for Probabilistic Spatio-temporal Solar Irradiance Forecasting. IEEE Transactions on Sustainable Energy, 2019. paper
Zhang Q, Chang J, Meng G, et al. Learning graph structure via graph convolutional networks. Pattern Recognition, 2019. paper
Xuan P, Pan S, Zhang T, et al. Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations. Cells, 2019. paper
Sun M, Zhao S, Gilvary C, et al. Graph convolutional networks for computational drug development and discovery. Briefings in bioinformatics, 2019. paper
Spier N, Nekolla S, Rupprecht C, et al. Classification of Polar Maps from Cardiac Perfusion Imaging with Graph-Convolutional Neural Networks. Scientific reports, 2019. paper
Heyuan Shi, et al. Hypergraph-Induced Convolutional Networks for Visual Classification. IEEE Transactions on Neural Networks and Learning Systems, 2019. paper
S.Pan, et al. Learning Graph Embedding With Adversarial Training Methods. IEEE Transactions on Cybernetics, 2019. paper
D. Grattarola, et al. Change Detection in Graph Streams by Learning Graph Embeddings on Constant-Curvature Manifolds. IEEE Transactions on Neural Networks and Learning Systems. 2019. paper
Kan Guo, et al. Optimized Graph Convolution Recurrent Neural Network for Traffic Prediction. IEEE Transactions on Intelligent Transportation Systems. 2020. paper
Ruiz L, et al. Invariance-preserving localized activation functions for graph neural networks. IEEE Transactions on Signal Processing, 2020. paper
Li J, et al. Neural Inductive Matrix Completion with Graph Convolutional Networks for miRNA-disease Association Prediction. Bioinformatics, 2020. paper
Bingzhi Chen, et al. Label Co-occurrence Learning with Graph Convolutional Networks for Multi-label Chest X-ray Image Classification. IEEE Journal of Biomedical and Health Informatics, 2020. paper
Kunjin Chen, et al. Fault Location in Power Distribution Systems via Deep Graph Convolutional Networks. IEEE Journal on Selected Areas in Communications, 2020. paper
Manessi, Franco, et al. Dynamic graph convolutional networks. Pattern Recognition, 2020. paper
Jiang X, Zhu R, Li S, et al. Co-embedding of Nodes and Edges with Graph Neural Networks. IEEE Transactions on Pattern Analysis and Machine Intelligence. paper
Wang Z, Ji S. Second-order pooling for graph neural networks. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2020. paper
Indro Spinelli, et al. Adaptive Propagation Graph Convolutional Network. IEEE Transactions on Neural Networks and Learning Systems, 2020. paper
Zhou Fan, et al. Reinforced Spatiotemporal Attentive Graph Neural Networks for Traffic Forecasting. IEEE Internet of Things Journal, 2020. paper
Wang S H, et al. Covid-19 classification by FGCNet with deep feature fusion from graph convolutional network and convolutional neural network. Information Fusion, 2020. paper
Ruiz, Luana et al. Gated Graph Recurrent Neural Networks, IEEE Transactions on Signal Processing. paper
Gama, Fernando et al. Stability Properties of Graph Neural Networks, IEEE Transactions on Signal Processing. paper
He, Xin et al. MV-GNN: Multi-View Graph Neural Network for Compression Artifacts Reduction, IEEE Transactions on Image Processing. paper
Conference papers:
Duvenaud D, Maclaurin D, Aguilera-Iparraguirre J, et al. Convolutional networks on graphs for learning molecular fingerprints, NeurIPS(NIPS) 2015. paper. code.
M. Niepert, M. Ahmed, K. Kutzkov, Learning Convolutional Neural Networks for Graphs, ICML 2016. paper.
S. Cao, W. Lu, Q. Xu, Deep neural networks for learning graph representations, AAAI 2016. paper.
M. Defferrard, X. Bresson, P. Vandergheynst, Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering, NeurIPS(NIPS) 2016. paper. code.
T.N. Kipf, M. Welling, Semi-Supervised Classification with Graph Convolutional Networks, ICLR 2017. paper. code.
A. Fout, B. Shariat, J. Byrd, A. Benhur, Protein Interface Prediction using Graph Convolutional Networks, NeurIPS(NIPS) 2017. paper.
Monti F, Bronstein M, Bresson X. Geometric matrix completion with recurrent multi-graph neural networks, NeurIPS(NIPS) 2017. paper.
Simonovsky M, Komodakis N. Dynamic edgeconditioned filters in convolutional neural networks on graphs, CVPR. 2017. paper
R. Li, S. Wang, F. Zhu, J. Huang, Adaptive Graph Convolutional Neural Networks, AAAI 2018. paper
J. You, B. Liu, R. Ying, V. Pande, J. Leskovec, Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation, NeurIPS(NIPS) 2018. paper.
C. Zhuang, Q. Ma, Dual Graph Convolutional Networks for Graph-Based Semi-Supervised Classification, WWW 2018. paper
H. Gao, Z. Wang, S. Ji, Large-Scale Learnable Graph Convolutional Networks, KDD 2018. paper
D. Zügner, A. Akbarnejad, S. Günnemann, Adversarial Attacks on Neural Networks for Graph Data, KDD 2018. paper
Ying R , He R , Chen K , et al. Graph Convolutional Neural Networks for Web-Scale Recommender Systems. KDD 2018. paper
P. Veličković, G. Cucurull, A. Casanova, A. Romero, P. Liò, Y. Bengio, Graph Attention Networks, ICLR, 2018. paper
Beck, Daniel Edward Robert, Gholamreza Haffari and Trevor Cohn. Graph-to-Sequence Learning using Gated Graph Neural Networks. ACL 2018. paper
Yu B, Yin H, Zhu Z. Spatio-temporal graph convolutional networks: A deep learning framework for traffic forecasting. IJCAI 2018. paper
Chen J , Zhu J , Song L . Stochastic Training of Graph Convolutional Networks with Variance Reduction. ICML 2018. paper
Gusi Te, Wei Hu, Amin Zheng, Zongming Guo, RGCNN: Regularized Graph CNN for Point Cloud Segmentation. ACM Multimedia 2018. paper, code,
Talukdar, Partha, Shikhar Vashishth, Shib Sankar Dasgupta and Swayambhu Nath Ray. Dating Documents using Graph Convolution Networks. ACL 2018. paper, code
Sanchez-Gonzalez A , Heess N , Springenberg J T , et al. Graph networks as learnable physics engines for inference and control. ICML 2018. paper
Muhan Zhang, Yixin Chen. Link Prediction Based on Graph Neural Networks. NeurIPS(NIPS) 2018. paper
Chen, Jie, Tengfei Ma, and Cao Xiao. FastGCN: Fast Learning with Graph Convolutional Networks via Importance Sampling. ICLR 2018. paper
Zhang, Zhen, Hongxia Yang, Jiajun Bu, Sheng Zhou, Pinggang Yu, Jianwei Zhang, Martin Ester, and Can Wang. ANRL: Attributed Network Representation Learning via Deep Neural Networks.. IJCAI 2018. paper
Rahimi A , Cohn T , Baldwin T . Semi-supervised User Geolocation via Graph Convolutional Networks. ACL 2018. paper
Morris C , Ritzert M , Fey M , et al.Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networks.. AAAI 2019. paper
Xu K, Hu W, Leskovec J, et al. How Powerful are Graph Neural Networks?, ICLR 2019. paper
Johannes Klicpera, Aleksandar Bojchevski, Stephan Günnemann. Combining Neural Networks with Personalized PageRank for Classification on Graphs, ICLR 2019. paper
Daniel Zügner, Stephan Günnemann. Adversarial Attacks on Graph Neural Networks via Meta Learning, ICLR 2019. paper
Zhang Xinyi, Lihui Chen. Capsule Graph Neural Network, ICLR 2019. paper
Liao, R., Zhao, Z., Urtasun, R., and Zemel, R. LanczosNet: Multi-Scale Deep Graph Convolutional Networks, ICLR 2019, paper
Bingbing Xu, Huawei Shen, Qi Cao, Yunqi Qiu, Xueqi Cheng. Graph Wavelet Neural Network, ICLR 2019, paper
Hu J, Guo C, Yang B, et al. Stochastic Weight Completion for Road Networks using Graph Convolutional Networks ICDE. 2019. paper
Yao L, Mao C, Luo Y . Graph Convolutional Networks for Text Classification. AAAI 2019. paper
Landrieu L , Boussaha M . Point Cloud Oversegmentation with Graph-Structured Deep Metric Learning. CVPR 2019. paper
Si C , Chen W , Wang W , et al. An Attention Enhanced Graph Convolutional LSTM Network for Skeleton-Based Action Recognition. CVPR 2019. paper
Cucurull G , Taslakian P , Vazquez D . Context-Aware Visual Compatibility Prediction. CVPR 2019. paper
Jia-Xing Zhong, Nannan Li, Weijie Kong, Shan Liu, Thomas H. Li, Ge Li. Graph Convolutional Label Noise Cleaner: Train a Plug-and-play Action Classifier for Anomaly Detection. CVPR 2019. paper
Michael Kampffmeyer, Yinbo Chen, Xiaodan Liang, Hao Wang, Yujia Zhang, Eric P. Xing. Rethinking Knowledge Graph Propagation for Zero-Shot Learning. CVPR 2019. paper
Arushi Goel, Keng Teck Ma, Cheston Tan. An End-to-End Network for Generating Social Relationship Graphs. CVPR 2019. paper
Yichao Yan, Qiang Zhang, Bingbing Ni, Wendong Zhang, Minghao Xu, Xiaokang Yang. Learning Context Graph for Person Search. CVPR 2019 paper
Zhongdao Wang, Liang Zheng, Yali Li, Shengjin Wang. Linkage Based Face Clustering via Graph Convolution Network. CVPR 2019 paper
Lei Yang, Xiaohang Zhan, Dapeng Chen, Junjie Yan, Chen Change Loy, Dahua Lin. Learning to Cluster Faces on an Affinity Graph. CVPR 2019 paper
Yao Ma, Suhang Wang, Charu C. Aggarwal, Jiliang Tang. Graph Convolutional Networks with EigenPooling. KDD2019, paper
Wenqi Fan, Yao Ma, Qing Li, Yuan He, Eric Zhao, Jiliang Tang, Dawei Yin. Graph Neural Networks for Social Recommendation. WWW2019, paper
Kim J, Kim T, Kim S, et al. Edge-labeling Graph Neural Network for Few-shot Learning. CVPR 2019. paper
Jessica V. Schrouff, Kai Wohlfahrt, Bruno Marnette, Liam Atkinson. INFERRING JAVASCRIPT TYPES USING GRAPH NEURAL NETWORKS. ICLR 2019. paper
Emanuele Rossi, Federico Monti, Michael Bronstein, Pietro liò. ncRNA Classification with Graph Convolutional Networks. SIGKDD 2019. paper
Wu F, Zhang T, Souza Jr A H, et al. Simplifying Graph Convolutional Networks. ICML 2019. paper.
Junhyun Lee, Inyeop Lee, Jaewoo Kang. Self-Attention Graph Pooling. ICML 2019. paper.
Chiang W L, Liu X, Si S, et al. Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks. SIGKDD 2019. paper.
Namyong Park, Andrey Kan, Xin Luna Dong, Tong Zhao, Christos Faloutsos, Estimating Node Importance in Knowledge Graphs Using Graph Neural Networks. SIGKDD 2019. paper.
Wu S, Tang Y, Zhu Y, et al. Session-based Recommendation with Graph Neural Networks. AAAI 2019. paper.
Qu M, Bengio Y, Tang J. GMNN: Graph Markov Neural Networks. ICML 2019. papercoder.
Li Y, Gu C, Dullien T, et al. Graph Matching Networks for Learning the Similarity of Graph Structured Objects, ICML 2019.paper.
Gao H, Ji S. Graph U-Nets, ICML 2019. paper.
Bojchevski A, Günnemann S. Adversarial Attacks on Node Embeddings via Graph Poisoning, ICML 2019. paper.
Jeong D, Kwon T, Kim Y, et al. Graph Neural Network for Music Score Data and Modeling Expressive Piano Performance. ICML 2019. paper.
Zhang G, He H, Katabi D. Circuit-GNN: Graph Neural Networks for Distributed Circuit Design. ICML 2019. paper.
Alet F, Jeewajee A K, Bauza M, et al. Graph Element Networks: adaptive, structured computation and memory, ICML 2019. paper.
Rieck B, Bock C, Borgwardt K. A Persistent Weisfeiler-Lehman Procedure for Graph Classification, ICML 2019. paper.
Walker I, Glocker B. Graph Convolutional Gaussian Processes，ICML 2019. paper.
Yu Y, Chen J, Gao T, et al. DAG-GNN: DAG Structure Learning with Graph Neural Networks, ICML 2019. paper.
Zhijiang Guo, Yan Zhang and Wei Lu, Attention Guided Graph Convolutional Networks for Relation Extraction ACL 2019. paper. coder.
Chang Li, Dan Goldwasser. Encoding Social Information with Graph Convolutional Networks for Political Perspective Detection in News Media ACL 2019. paper.
Hao Zhu, Yankai Lin, Zhiyuan Liu, Jie Fu, Tat-seng Chua, Maosong Sun. Graph Neural Networks with Generated Parameters for Relation Extraction ACL 2019. paper.
Shikhar Vashishth, Manik Bhandari, Prateek Yadav, Piyush Rai, Chiranjib Bhattacharyya, Partha Talukdar. Incorporating Syntactic and Semantic Information in Word Embeddings using Graph Convolutional Networks ACL 2019. paper.
Cui Z, Li Z, Wu S, et al. Dressing as a Whole: Outfit Compatibility Learning Based on Node-wise Graph Neural Networks WWW 2019. paper.
Zhang, Chris, et al. Graph HyperNetworks for Neural Architecture Search. ICLR 2019. paper.
Chen, Zhengdao, et al. Supervised Community Detection with Line Graph Neural Networks. ICLR 2019. paper.
Maron, Haggai, et al. Invariant and Equivariant Graph Networks. ICLR 2019. paper.
Gulcehre, Caglar, et al. Hyperbolic Attention Networks. ICLR, 2019. paper.
Prates, Marcelo O. R., et al. Learning to Solve NP-Complete Problems -- A Graph Neural Network for the Decision TSP. AAAI, 2019. paper.
Liu, Ziqi, et al. GeniePath: Graph Neural Networks with Adaptive Receptive Paths. AAAI, 2019. paper.
Keriven N, Peyré G. Universal invariant and equivariant graph neural networks. NeurIPS, 2019. paper.
Qi Liu, et al. Hyperbolic Graph Neural Networks. NeurIPS, 2019. paper.
Zhitao Ying, et al. GNNExplainer: Generating Explanations for Graph Neural Networks. NeurIPS, 2019. paper.
Yaqin Zhou, et al. Devign: Effective Vulnerability Identification by Learning Comprehensive Program Semantics via Graph Neural Networks. NeurIPS, 2019. paper.
Ehsan Hajiramezanali, et al. Variational Graph Recurrent Neural Networks. NeurIPS, 2019. paper.
Sitao Luan, et al. Break the Ceiling: Stronger Multi-scale Deep Graph Convolutional Networks. NeurIPS, 2019. paper.
Difan Zou, et al. Layer-Dependent Importance Sampling for Training Deep and Large Graph Convolutional Networks. NeurIPS, 2019. paper.
Seongjun Yun, et al. Graph Transformer Networks. NeurIPS, 2019. paper.
Andrei Nicolicioiu, et al. Recurrent Space-time Graph Neural Networks. NeurIPS, 2019. paper.
Nima Dehmamy, et al. Understanding the Representation Power of Graph Neural Networks in Learning Graph Topology. NeurIPS, 2019. paper.
Maxime Gasse, et al. Exact Combinatorial Optimization with Graph Convolutional Neural Networks. NeurIPS, 2019. paper.
Zhengdao Chen, et al. On the equivalence between graph isomorphism testing and function approximation with GNNs. NeurIPS, 2019. paper.
Vineet Kosaraju, et al. Social-BiGAT: Multimodal Trajectory Forecasting using Bicycle-GAN and Graph Attention Networks. NeurIPS, 2019. paper.
Carl Yang, et al.Conditional Structure Generation through Graph Variational Generative Adversarial Nets. NeurIPS, 2019. paper.
Naganand Yadati, et al.HyperGCN: A New Method For Training Graph Convolutional Networks on Hypergraphs. NeurIPS, 2019. paper.
Haggai Maron, et al.Provably Powerful Graph Networks. NeurIPS, 2019. paper.
Eliya Nachmani, et al.Hyper-Graph-Network Decoders for Block Codes. NeurIPS, 2019. paper.
Hanjun Dai, et al.Learning Transferable Graph Exploration. NeurIPS, 2019. paper.
Ryoma Sato, et al.Approximation Ratios of Graph Neural Networks for Combinatorial Problems. NeurIPS, 2019. paper.
Boris Knyazev, et al.Understanding Attention and Generalization in Graph Neural Networks. NeurIPS, 2019. paper.
Renjie Liao, et al.Efficient Graph Generation with Graph Recurrent Attention Networks. NeurIPS, 2019. paper.
Bryan Wilder, et al.End to end learning and optimization on graphs. NeurIPS, 2019. paper.
Simon Du, et al.Graph Neural Tangent Kernel: Fusing Graph Neural Networks with Graph Kernels. NeurIPS, 2019. paper.
W. O. K. Asiri Suranga Wijesinghe, et al. DFNets: Spectral CNNs for Graphs with Feedback-looped Filters. NeurIPS, 2019. paper.
Dong Wook Shu, et al.3D Point Cloud Generative Adversarial Network Based on Tree Structured Graph Convolutions. ICCV 2019. paper
Yujun Cai, et al. Exploiting Spatial-temporal Relationships for 3D Pose Estimation via Graph Convolutional Networks. ICCV 2019. paper
Runhao Zeng, et al. Graph Convolutional Networks for Temporal Action Localization. ICCV 2019. paper
Yin Bi, et al. Graph-Based Object Classification for Neuromorphic Vision Sensing. ICCV 2019. paper
103.Tianshui Chen, et al. Learning Semantic-Specific Graph Representation for Multi-Label Image Recognition. ICCV 2019. paper
Linjie Li, et al. Relation-Aware Graph Attention Network for Visual Question Answering. ICCV 2019. paper
Jiwoong Park, et al. Symmetric Graph Convolutional Autoencoder for Unsupervised Graph Representation Learning. ICCV 2019. paper
Runzhong Wang, et al. Learning Combinatorial Embedding Networks for Deep Graph Matching. ICCV 2019. paper
Zhiqiang Tao, et al. Adversarial Graph Embedding for Ensemble Clustering. IJCAI 2019. paper
Xiaotong Zhang, et al. Attributed Graph Clustering via Adaptive Graph Convolution. IJCAI 2019. paper
Jianwen Jiang, et al. Dynamic Hypergraph Neural Networks. IJCAI 2019. paper
Hogun Park, et al. Exploiting Interaction Links for Node Classification with Deep Graph Neural Networks. IJCAI 2019. paper
Hao Peng, et al. Fine-grained Event Categorization with Heterogeneous Graph Convolutional Networks. IJCAI 2019. paper
Chengfeng Xu, et al. Graph Contextualized Self-Attention Network for Session-based Recommendation. IJCAI 2019. paper
Ruiqing Xu, et al. Graph Convolutional Network Hashing for Cross-Modal Retrieval. IJCAI 2019. paper
Bingbing Xu, et al. Graph Convolutional Networks using Heat Kernel for Semi-supervised Learning. IJCAI 2019. paper
Zonghan Wu, et al. Graph WaveNet for Deep Spatial-Temporal Graph Modeling. IJCAI 2019. paper
Fenyu Hu, et al. Hierarchical Graph Convolutional Networks for Semi-supervised Node Classification. IJCAI 2019. paper
Li Zheng, et al. AddGraph: Anomaly Detection in Dynamic Graph Using Attention-based Temporal GCN. IJCAI 2019. paper
Liang Yang, et al. Dual Self-Paced Graph Convolutional Network: Towards Reducing Attribute Distortions Induced by Topology. IJCAI 2019. paper
Liang Yang, et al. Masked Graph Convolutional Network. IJCAI 2019. paper
Xiaofeng Xu, et al. Learning Image-Specific Attributes by Hyperbolic Neighborhood Graph Propagation. IJCAI 2019. paper
Li G, Müller M, Thabet A, et al. Can GCNs Go as Deep as CNNs?. ICCV 2019. paper.
Park C, Lee C, Bahng H, et al. STGRAT: A Spatio-Temporal Graph Attention Network for Traffic Forecasting. AAAI 2020. paper.
Liu Y, Wang X, Wu S, et al. Independence Promoted Graph Disentangled Networks. AAAI 2020. paper.
Shi H, Fan H, Kwok J T. Effective Decoding in Graph Auto-Encoder using Triadic Closure. AAAI 2020. paper.
Wang X, Wang R, Shi C, et al. Multi-Component Graph Convolutional Collaborative Filtering. AAAI 2020. paper.
Su J, Beling P A, Guo R, et al. Graph Convolution Networks for Probabilistic Modeling of Driving Acceleration. AAAI 2020. paper.
Claudio Gallicchio and Alessio Micheli. Fast and Deep Graph Neural Networks. AAAI 2020. paper.
Peng W, Hong X, Chen H, et al. Learning Graph Convolutional Network for Skeleton-based Human Action Recognition by Neural Searching. AAAI 2020. paper.
Paliwal A, Loos S, Rabe M, et al. Graph Representations for Higher-Order Logic and Theorem Proving. AAAI 2020. paper.
Kenta Oono, et al. Graph Neural Networks Exponentially Lose Expressive Power for Node Classification. ICLR 2020. paper.
Muhan Zhang, et al. Inductive Matrix Completion Based on Graph Neural Networks. ICLR 2020. paper.
Pablo Barceló, et al. The Logical Expressiveness of Graph Neural Networks. ICLR 2020. paper
Weihua Hu, et al. Strategies for Pre-training Graph Neural Networks. ICLR 2020. paper
Hongbin Pei, et al. Geom-GCN: Geometric Graph Convolutional Networks. ICLR 2020. paper
Ze Ye, et al. Curvature Graph Network. ICLR 2020. paper
Andreas Loukas, et al. What graph neural networks cannot learn: depth vs width. ICLR 2020. paper
Federico Errica, et al. A Fair Comparison of Graph Neural Networks for Graph Classification. ICLR 2020. paper
Kai Zhang, et al. Adaptive Structural Fingerprints for Graph Attention Networks. ICLR 2020. paper
Shikhar Vashishth, et al. Composition-based Multi-Relational Graph Convolutional Networks. ICLR 2020. paper
Jiayi Wei, et al. LambdaNet: Probabilistic Type Inference using Graph Neural Networks. ICLR 2020. paper
Jiechuan Jiang, et al. Graph Convolutional Reinforcement Learning. ICLR 2020. paper
Yifan Hou, et al. Measuring and Improving the Use of Graph Information in Graph Neural Networks. ICLR 2020. paper
Ruochi Zhang, et al. Hyper-SAGNN: a self-attention based graph neural network for hypergraphs. ICLR 2020. paper
Yu Rong, et al. DropEdge: Towards Deep Graph Convolutional Networks on Node Classification. ICLR 2020. paper
Yuyu Zhang, et al. Efficient Probabilistic Logic Reasoning with Graph Neural Networks. ICLR 2020. paper
Amir hosein Khasahmadi, et al. Memory-based graph networks. ICLR 2020. paper
Zeng, Hanqing, et al. GraphSAINT: Graph Sampling Based Inductive Learning Method. ICLR 2020. paper
Jiangke Lin, et al. Towards High-Fidelity 3D Face Reconstruction from In-the-Wild Images Using Graph Convolutional Networks. CVPR 2020. paper
Oytun Ulutan, et al. VSGNet: Spatial Attention Network for Detecting Human Object Interactions Using Graph Convolutions. CVPR 2020. paper
Qiangeng Xu, et al. Grid-GCN for Fast and Scalable Point Cloud Learning. CVPR 2020. paper
Abduallah Mohamed and Kun Qian, Social-STGCNN: A Social Spatio-Temporal Graph Convolutional Neural Network for Human Trajectory Prediction. CVPR 2020. paper
Kaihua Zhang, et al. Adaptive Graph Convolutional Network with Attention Graph Clustering for Co-saliency Detection. CVPR 2020. paper
Jiaming Shen, et al. TaxoExpan: Self-supervised Taxonomy Expansion with Position-Enhanced Graph Neural Network. WWW 2020. paper
Deyu Bo, et al. Structural Deep Clustering Network. WWW 2020. paper
Xinyu Fu, et al. MAGNN: Metapath Aggregated Graph Neural Network for Heterogeneous Graph Embedding. WWW 2020. paper
Man Wu, et al. Unsupervised Domain Adaptive Graph Convolutional Networks. WWW 2020. paper
Yiwei Sun, et al. Adversarial Attacks on Graph Neural Networks via Node Injections: A Hierarchical Reinforcement Learning Approach. WWW 2020. paper
Xiaoyang Wang, et al. Traffic Flow Prediction via Spatial Temporal Graph Neural Network. WWW 2020. paper
Qiaoyu Tan, et al. Learning to Hash with Graph Neural Networks for Recommender Systems. WWW 2020. paper
Liang Qu, et al. Continuous-Time Link Prediction via Temporal Dependent Graph Neural Network. WWW 2020. paper
Wei Jin, et al. Graph Structure Learning for Robust Graph Neural Networks. KDD 2020. paper, code.
Zonghan Wu, et al. Connecting the Dots: Multivariate Time Series Forecasting with Graph Neural Networks. KDD 2020. paper.
Zhen Yang, et al. Understanding Negative Sampling in Graph Representation Learning. KDD 2020. paper.
Menghan Wang, et al. M2GRL: A Multi-task Multi-view Graph Representation Learning Framework for Web-scale Recommender Systems. KDD 2020. paper.
Louis-Pascal A. C. Xhonneux, et al. Continuous Graph Neural Networks. ICML 2020. paper.
Marc Brockschmidt, et al. GNN-FiLM: Graph Neural Networks with Feature-wise Linear Modulation. ICML 2020. paper to appear.
Arman Hasanzadeh, et al. Bayesian Graph Neural Networks with Adaptive Connection Sampling. ICML 2020. paper to appear.
Filipe de Avila Belbute-Peres, et al. Combining Differentiable PDE Solvers and Graph Neural Networks for Fluid Flow Prediction. ICML 2020. paper to appear.
Ilay Luz, et al. Learning Algebraic Multigrid Using Graph Neural Networks. ICML 2020. paper to appear.
Vikas K Garg, et al. Generalization and Representational Limits of Graph Neural Networks. ICML 2020. paper to appear.
Shuai Zhang, et al. Fast Learning of Graph Neural Networks with Guaranteed Generalizability: One-hidden-layer Case. ICML 2020. paper to appear.
Filippo, et al. Maria BianchiSpectral Clustering with Graph Neural Networks for Graph Pooling. ICML 2020. paper to appear.
Ming Chen, et al. Simple and Deep Graph Convolutional Networks. ICML 2020. paper to appear.
Yuning You, et al. When Does Self-Supervision Help Graph Convolutional Networks?. ICML 2020. paper to appear.
Gregor Bachmann, et al. Constant Curvature Graph Convolutional Networks. ICML 2020. paper to appear.
Wenhui Yu, et al. Graph Convolutional Network for Recommendation with Low-pass Collaborative Filters. ICML 2020. paper to appear.
Hongmin Zhu, et al. Bilinear Graph Neural Network with Neighbor Interactions. IJCAI 2020. paper.
Shuo Zhang, et al. Improving Attention Mechanism in Graph Neural Networks via Cardinality Preservation. IJCAI 2020. paper.
Kaixiong Zhou, et al. Multi-Channel Graph Neural Networks. IJCAI 2020. paper.
George Dasoulas, et al. Coloring Graph Neural Networks for Node Disambiguation. IJCAI 2020. paper.
Xuan Lin, et al. KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction. IJCAI 2020. paper.
Yuan Zhuang, et al. Smart Contract Vulnerability Detection using Graph Neural Network. IJCAI 2020. paper.
Ziyu Jia, et al. GraphSleepNet: Adaptive Spatial-Temporal Graph Convolutional Networks for Sleep Stage Classification. IJCAI 2020. paper.
Zhichao Huang, et al. MR-GCN: Multi-Relational Graph Convolutional Networks based on Generalized Tensor Product. IJCAI 2020. paper.
Rongzhou Huang, et al. LSGCN: Long Short-Term Traffic Prediction with Graph Convolutional Networks. IJCAI 2020. paper.
Min Shi, et al. Multi-Class Imbalanced Graph Convolutional Network Learning. IJCAI 2020. paper.
Dongxiao He, et al. Community-Centric Graph Convolutional Network for Unsupervised Community Detection. IJCAI 2020. paper.
Luana Ruiz et al. Graphon Neural Networks and the Transferability of Graph Neural Networks. NeurIPS 2020. paper
Diego Mesquita et al. Rethinking pooling in graph neural networks. NeurIPS 2020. paper
Petar Veličković et al. Pointer Graph Networks. NeurIPS 2020. paper
Andreas Loukas. How hard is to distinguish graphs with graph neural networks?. NeurIPS 2020. paper
Shangchen Zhou et al. Cross-Scale Internal Graph Neural Network for Image Super-Resolution. NeurIPS 2020. paper
Jiaqi Ma et al. Towards More Practical Adversarial Attacks on Graph Neural Networks. NeurIPS 2020. paper
Kaixiong Zhou et al. Towards Deeper Graph Neural Networks with Differentiable Group Normalization. NeurIPS 2020. paper
Benjamin Sanchez-Lengeling et al. Evaluating Attribution for Graph Neural Networks. NeurIPS 2020. paper
Ziqi Liu et al. Bandit Samplers for Training Graph Neural Networks. NeurIPS 2020. paper
Jiong Zhu et al. Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs. NeurIPS 2020. paper
Emily Alsentzer et al. Subgraph Neural Networks. NeurIPS 2020. paper
Zhen Zhang et al. Factor Graph Neural Networks. NeurIPS 2020. paper
Xiang Zhang et al. GNNGuard: Defending Graph Neural Networks against Adversarial Attacks. NeurIPS 2020. paper
Zhengdao Chen et al. Can Graph Neural Networks Count Substructures?. NeurIPS 2020. paper
Fangda Gu et al. Implicit Graph Neural Networks. NeurIPS 2020. paper
Minh Vu et al. PGM-Explainer: Probabilistic Graphical Model Explanations for Graph Neural Networks. NeurIPS 2020. paper
Simon Geisler et al. Reliable Graph Neural Networks via Robust Aggregation. NeurIPS 2020. paper
Clément Vignac et al. Building powerful and equivariant graph neural networks with structural message-passing. NeurIPS 2020. paper
Ming Chen et al. Scalable Graph Neural Networks via Bidirectional Propagation. NeurIPS 2020. paper
Giannis Nikolentzos et al. Random Walk Graph Neural Networks. NeurIPS 2020. paper
Zheng Ma et al. Path Integral Based Convolution and Pooling for Graph Neural Networks. NeurIPS 2020. paper
Jiaxuan You et al. Design Space for Graph Neural Networks. NeurIPS 2020. paper
Defu Cao et al. Spectral Temporal Graph Neural Network for Multivariate Time-series Forecasting. NeurIPS 2020. paper
Kenta Oono et al. Optimization and Generalization Analysis of Transduction through Gradient Boosting and Application to Multi-scale Graph Neural Networks. NeurIPS 2020. paper
Yu Chen et al. Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddings. NeurIPS 2020. paper
Dongsheng Luo et al. Parameterized Explainer for Graph Neural Network. NeurIPS 2020. paper
Martin Klissarov et al. Reward Propagation Using Graph Convolutional Networks. NeurIPS 2020. paper
Yimeng Min et al. Scattering GCN: Overcoming Oversmoothness in Graph Convolutional Networks. NeurIPS 2020. paper
LEI BAI et al. Adaptive Graph Convolutional Recurrent Network for Traffic Forecasting. NeurIPS 2020. paper
Moshe Eliasof et al. DiffGCN: Graph Convolutional Networks via Differential Operators and Algebraic Multigrid Pooling. NeurIPS 2020. paper
Pantelis Elinas et al. Variational Inference for Graph Convolutional Networks in the Absence of Graph Data and Adversarial Settings. NeurIPS 2020. paper
Yiding Yang et al. Factorizable Graph Convolutional Networks. NeurIPS 2020. paper
Nicolas Keriven et al. Convergence and Stability of Graph Convolutional Networks on Large Random Graphs. NeurIPS 2020. paper
Chen K, Niu M, Chen Q. A Hierarchical Reasoning Graph Neural Network for The Automatic Scoring of Answer Transcriptions in Video Job Interviews. AAAI 2021. paper
ArXiv papers:
Li Y, Tarlow D, Brockschmidt M, et al. Gated graph sequence neural networks. arXiv 2015. paper
Henaff M, Bruna J, LeCun Y. Deep convolutional networks on graph-structured data, arXiv 2015. paper
Hechtlinger Y, Chakravarti P, Qin J. A generalization of convolutional neural networks to graph-structured data. arXiv 2017. paper
Marcheggiani D, Titov I. Encoding sentences with graph convolutional networks for semantic role labeling. arXiv 2017. paper
Battaglia P W, Hamrick J B, Bapst V, et al. Relational inductive biases, deep learning, and graph networks, arXiv 2018. paper
Verma S, Zhang Z L. Graph Capsule Convolutional Neural Networks. arXiv 2018. paper
Zhang T , Zheng W , Cui Z , et al. Tensor graph convolutional neural network. arXiv 2018. paper
Zou D, Lerman G. Graph Convolutional Neural Networks via Scattering. arXiv 2018. paper
Du J , Zhang S , Wu G , et al. Topology Adaptive Graph Convolutional Networks. arXiv 2018. paper.
Shang C , Liu Q , Chen K S , et al. Edge Attention-based Multi-Relational Graph Convolutional Networks. arXiv 2018. paper.
Scardapane S , Vaerenbergh S V , Comminiello D , et al. Improving Graph Convolutional Networks with Non-Parametric Activation Functions. arXiv 2018. paper.
Wang Y , Sun Y , Liu Z , et al. Dynamic Graph CNN for Learning on Point Clouds. arXiv 2018. paper.
Ryu S , Lim J , Hong S H , et al. Deeply learning molecular structure-property relationships using attention- and gate-augmented graph convolutional network. arXiv 2018. paper.
Cui Z , Henrickson K , Ke R , et al. High-Order Graph Convolutional Recurrent Neural Network: A Deep Learning Framework for Network-Scale Traffic Learning and Forecasting. arXiv 2018. paper.
Shchur O , Mumme M , Bojchevski A , et al. Pitfalls of Graph Neural Network Evaluation. arXiv 2018. paper.
Bai Y , Ding H , Bian S , et al. Graph Edit Distance Computation via Graph Neural Networks. arXiv 2018. paper.
Pedro H. C. Avelar, Henrique Lemos, Marcelo O. R. Prates, Luis Lamb, Multitask Learning on Graph Neural Networks - Learning Multiple Graph Centrality Measures with a Unified Network. arXiv 2018. paper.
Matthew Baron, Topology and Prediction Focused Research on Graph Convolutional Neural Networks. arXiv 2018. paper.
Wenting Zhao, Chunyan Xu, Zhen Cui, Tong Zhang, Jiatao Jiang, Zhenyu Zhang, Jian Yang, When Work Matters: Transforming Classical Network Structures to Graph CNN. arXiv 2018. paper.
Xavier Bresson, Thomas Laurent, Residual Gated Graph ConvNets. arXiv 2018. paper.
Kun XuLingfei WuZhiguo WangYansong FengVadim Sheinin, Graph2Seq: Graph to Sequence Learning with Attention-based Neural Networks. arXiv 2018. paper.
Xiaojie GuoLingfei WuLiang Zhao. Deep Graph Translation. arXiv 2018. paper.
Choma, Nicholas, et al. Graph Neural Networks for IceCube Signal Classification. ArXiv 2018. paper.
Tyler Derr, Yao Ma, Jiliang Tang. Signed Graph Convolutional Network ArXiv 2018. paper.
Yawei Luo, Tao Guan, Junqing Yu, Ping Liu, Yi Yang. Every Node Counts: Self-Ensembling Graph Convolutional Networks for Semi-Supervised Learning ArXiv 2018. paper.
Sun K, Koniusz P, Wang J. Fisher-Bures Adversary Graph Convolutional Networks. arXiv 2019. paper.
Kazi A, Burwinkel H, Vivar G, et al. InceptionGCN: Receptive Field Aware Graph Convolutional Network for Disease Prediction. arXiv 2019. paper.
Lemos H, Prates M, Avelar P, et al. Graph Colouring Meets Deep Learning: Effective Graph Neural Network Models for Combinatorial Problems. arXiv 2019. paper.
Diehl F, Brunner T, Le M T, et al. Graph Neural Networks for Modelling Traffic Participant Interaction. arXiv 2019. paper.
Murphy R L, Srinivasan B, Rao V, et al. Relational Pooling for Graph Representations. arXiv 2019. paper.
Zhang W, Shu K, Liu H, et al. Graph Neural Networks for User Identity Linkage. arXiv 2019. paper.
Ruiz L, Gama F, Ribeiro A. Gated Graph Convolutional Recurrent Neural Networks. arXiv 2019. paper.
Phillips S, Daniilidis K. All Graphs Lead to Rome: Learning Geometric and Cycle-Consistent Representations with Graph Convolutional Networks. arXiv 2019. paper.
Hu F, Zhu Y, Wu S, et al. Semi-supervised Node Classification via Hierarchical Graph Convolutional Networks. arXiv 2019. paper.
Deng Z, Dong Y, Zhu J. Batch Virtual Adversarial Training for Graph Convolutional Networks. arXiv 2019. paper.
Chen Z M, Wei X S, Wang P, et al.Multi-Label Image Recognition with Graph Convolutional Networks. arXiv 2019. paper.
Mallea M D G, Meltzer P, Bentley P J. Capsule Neural Networks for Graph Classification using Explicit Tensorial Graph Representations. arXiv 2019. paper.
Peter Meltzer, Marcelo Daniel Gutierrez Mallea and Peter J. Bentley. PiNet: A Permutation Invariant Graph Neural Network for Graph Classification. arXiv 2019. paper.
Padraig Corcoran. Function Space Pooling For Graph Convolutional Networks. arXiv 2019. paper.
Sbastien Lerique, Jacob Levy Abitbol, and Mrton Karsai. Joint embedding of structure and features via graph convolutional networks. arXiv 2019. paper.
Chen D, Lin Y, Li W, et al. Measuring and Relieving the Over-smoothing Problem for Graph Neural Networks from the Topological View. arXiv 2019. paper
Ohue M, Ii R, Yanagisawa K, et al. Molecular activity prediction using graph convolutional deep neural network considering distance on a molecular graph. arXiv 2019. paper.
Gao X, Xiong H, Frossard P. iPool--Information-based Pooling in Hierarchical Graph Neural Networks. arXiv 2019. paper.
Zhou K, Song Q, Huang X, et al. Auto-GNN: Neural Architecture Search of Graph Neural Networks. arXiv 2019. paper.
Vijay Prakash Dwivedi, et al. Benchmarking Graph Neural Networks. arXiv 2020. paper.
Dai Quoc Nguyen, Tu Dinh Nguyen, Dinh Phung. Universal Self-Attention Network for Graph Classification. arXiv 2020. paper
Open source platform on GNN
Deep Graph Library（DGL)
DGL is developed and maintained by New York University, New York University Shanghai, AWS Shanghai Research Institute and AWS MXNet Science Team.
Initiation time: 2018.
Source: URL, github
NGra
NGra is developed and maintained by Peking University and Microsoft Asia Research Institute.
Initiation time:2018
Source: pdf
Graph_nets
Graph_nets is developed and maintained by DeepMind, Google Corp.
Initiation time:2018
Source: github
Euler
Euler is developed and maintained by Alimama, which belongs to Alibaba Group.
Initiation time:2019
Source: github
PyTorch Geometric
PyTorch Geometric is developed and maintained by TU Dortmund University, Germany.
Initiation time:2019
Source: github paper
PyTorch-BigGraph（PBG）
PBG is developed and maintained by Facebook AI Research.
Initiation time:2019
Source: github paper
Angel
Angel is developed and maintained by Tencent Inc.
Initiation time:2019
Source: github
Plato
Plato is developed and maintained by Tencent Inc.
Initiation time:2019
Source: github
PGL
PGL is developed and maintained by Baidu Inc.
Initiation time:2019
Source: github
OGB
Open Graph Benchmark(OGB) is developed and maintained by Standford University.
Initiation time:2019
Source: github
Benchmarking GNNs
Benchmarking GNNs is developed and maintained by Nanyang Technological University.
Initiation time:2020
Source: github
Graph-Learn
Graph-Learn is developed and maintained by Alibaba Group.
Initiation time:2020
Source: github
AutoGL (Auto Graph Learning) New
AutoGL is developed and maintained by Tsinghua University.
Initiation time:2020
Source: github
Appetizer for you：Art Exhibition in the Ultra-High Dimensional Network/Graph Structured Space
https://azure.microsoft.com/en-us/blog/announcing-microsoft-s-coco-framework-for-enterprise-blockchain-networks/
https://opensourcelibs.com/lib/diffnet
https://github.com/Messi-Q/GraphDeeSmartContract
https://xscode.com/jdlc105/Must-read-papers-and-continuous-tracking-on-Graph-Neural-Network-GNN-progress
Must-read papers and continuous track on Graph Neural Network(GNN) progress
Many important real-world applications and questions come in the form of graphs, such as social network, protein-protein interaction network, brain network, chemical molecular graph and 3D point cloud. Therefore, driven by the above interdisciplinary research, the neural network model for graph data-oriented has become an emerging research hotspot. Among them, two of the three pioneers of deep learning, Professor Yann LeCun (2018 Turing Award Winner), Professor Yoshua Bengio (2018 Turing Award Winner) and famous Professor Jure Leskovec from Stanford University AI lab also participated in it.
This project focuses on GNN, lists relevant must-read papers and keeps track of progress. We look forward to promoting this direction and providing some help to researchers in this direction.
Contributed by Allen Bluce (Dr. Bentian Li) and Anne Bluce (Dr. Yunxia Lin), If there is something wrong or GNN-related issue, welcome to send email (Address: jdlc105@qq.com, lbtjackbluce@gmail.com).
Technology Keyword: Graph Neural Network, Graph convolutional network, Graph network, Graph attention network, Graph auto-encoder, Graph convolutional reinforcement learning, Graph capsule neural network....
GNN and its variants are an emerging and powerful neural network approach. Its application is no longer limited to the original field. It has flourished in many other areas, such as Data Visualization, Image Processing, NLP, Recommendation System, Computer Vision, Bioinformatics, Chemical informatics, Drug Development and Discovery, Smart Transportation.
Very hot research topic: the representative work--Graph convolutional networks (GCNs) proposed by T.N. Kipf and M. Welling (ICLR2017 [5] in conference paper list) has been cited 1,020 times in Google Scholar (on 09 May 2019). Update: 1, 065 times (on 20 May 2019); Update: 1, 106 times (on 27 May 2019); Update: 1, 227 times (on 19 June 2019); Update: 1, 377 times (on 8 July 2019); Update: 1, 678 times (on 17 Sept. 2019); Update: 1, 944 times (on 29 Oct. 2019); Update: 2, 232 times (on 9 Dec. 2019); Update: 2, 677 times (on 2 Feb. 2020).Update: 3, 018 times (on 17 March. 2020); Update: 3,560 times (on 27 May. 2020); Update: 4,060 times (on 3 July. 2020); Update: 5,371 times (on 25 Oct. 2020). Update: 6,258 times (on 01 Jan. 2021).
Thanks for giving us so many stars and supports from the developers and scientists on Github around the world！！！ We will continue to make this project better.
Project Start time: 11 Dec 2018, Latest updated time: 01 Jan. 2021
New papers about GNN models and their applications have come from NeurIPS2020, AAAI2021 .... We are waiting for more paper to be released.
Survey papers:
Bronstein M M, Bruna J, LeCun Y, et al. Geometric deep learning: going beyond euclidean data. IEEE Signal Processing Magazine, 2017, 34(4): 18-42. paper
Jie Zhou, Ganqu Cui, Zhengyan Zhang, Cheng Yang, Zhiyuan Liu, Maosong Sun, Graph Neural Networks: A Review of Methods and Applications, ArXiv, 2018. paper.
Battaglia P W, Hamrick J B, Bapst V, et al. Relational inductive biases, deep learning, and graph networks, arXiv 2018. paper
Zonghan Wu, Shirui Pan, Fengwen Chen, Guodong Long, Chengqi Zhang, Philip S. Yu(Fellow,IEEE), A Comprehensive Survey on Graph Neural Networks, IEEE Transactions on Neural Networks and Learning Systems, 2020. paper.
Ziwei Zhang, Peng Cui, Wenwu Zhu, Deep Learning on Graphs: A Survey, IEEE Transactions on Knowledge and Data Engineering, 2020. paper.
Chen Z, Chen F, Zhang L, et al. Bridging the Gap between Spatial and Spectral Domains: A Survey on Graph Neural Networks. arXiv preprint. 2020. paper
Abadal S, Jain A, Guirado R, et al. Computing Graph Neural Networks: A Survey from Algorithms to Accelerators. arXiv preprint. 2020. paper
Lamb L, Garcez A, Gori M, et al. Graph Neural Networks Meet Neural-Symbolic Computing: A Survey and Perspective. arXiv preprint. 2020. paper
Journal papers:
F. Scarselli, M. Gori, A.C. Tsoi, M. Hagenbuchner, G. Monfardini, The graph neural network model, IEEE Transactions on Neural Networks(IEEE Transactions on Neural Networks and Learning Systems), 2009. paper.
Scarselli F, Gori M, Tsoi A C, et al. Computational capabilities of graph neural networks, IEEE Transactions on Neural Networks, 2009. paper.
Micheli A . Neural Network for Graphs: A Contextual Constructive Approach. IEEE Transactions on Neural Networks, 2009. paper.
Goles, Eric, and Gonzalo A. Ruz. Dynamics of Neural Networks over Undirected Graphs. Neural Networks, 2015. paper.
Z. Luo, L. Liu, J. Yin, Y. Li, Z. Wu, Deep Learning of Graphs with Ngram Convolutional Neural Networks, IEEE Transactions on Knowledge & Data Engineering, 2017. paper. code.
Petroski Such F , Sah S , Dominguez M A , et al. Robust Spatial Filtering with Graph Convolutional Neural Networks. IEEE Journal of Selected Topics in Signal Processing, 2017. paper.
Kawahara J, Brown C J, Miller S P, et al. BrainNetCNN: convolutional neural networks for brain networks; towards predicting neurodevelopment. NeuroImage, 2017. paper.
Muscoloni A , Thomas J M , Ciucci S , et al. Machine learning meets complex networks via coalescent embedding in the hyperbolic space. Nature Communications, 2017. paper.
D.M. Camacho, K.M. Collins, R.K. Powers, J.C. Costello, J.J. Collins, Next-Generation Machine Learning for Biological Networks, Cell, 2018. paper.
Marinka Z , Monica A , Jure L . Modeling polypharmacy side effects with graph convolutional networks. Bioinformatics, 2018. paper.
Sarah P , Ira K S , Enzo F , et al. Disease Prediction using Graph Convolutional Networks: Application to Autism Spectrum Disorder and Alzheimer’s Disease. Medical Image Analysis, 2018. paper.
Sofia Ira Ktena, Sarah Parisot, Enzo Ferrante, Martin Rajchl, Matthew Lee, Ben Glocker, Daniel Rueckert, Metric learning with spectral graph convolutions on brain connectivity networks, NeuroImage, 2018. paper.
Xie T , Grossman J C . Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties. Physical Review Letters, 2018. paper.
Phan, Anh Viet, Minh Le Nguyen, Yen Lam Hoang Nguyen, and Lam Thu Bui. DGCNN: A Convolutional Neural Network over Large-Scale Labeled Graphs. Neural Networks, 2018. paper
Song T, Zheng W, Song P, et al. Eeg emotion recognition using dynamical graph convolutional neural networks. IEEE Transactions on Affective Computing, 2018. paper
Levie R, Monti F, Bresson X, et al. Cayleynets: Graph convolutional neural networks with complex rational spectral filters. IEEE Transactions on Signal Processing 2019. paper
Zhang, Zhihong, Dongdong Chen, Jianjia Wang, Lu Bai, and Edwin R. Hancock. Quantum-Based Subgraph Convolutional Neural Networks. Pattern Recognition, 2019. paper
Qin A, Shang Z, Tian J, et al. Spectral–Spatial Graph Convolutional Networks for Semisupervised Hyperspectral Image Classification. IEEE Geoscience and Remote Sensing Letters, 2019. paper
Coley C W, Jin W, Rogers L, et al. A graph-convolutional neural network model for the prediction of chemical reactivity. Chemical Science, 2019. paper
Zhang Z, Chen D, Wang Z, et al. Depth-based Subgraph Convolutional Auto-Encoder for Network Representation Learning. Pattern Recognition, 2019. paper
Hong Y, Kim J, Chen G, et al. Longitudinal Prediction of Infant Diffusion MRI Data via Graph Convolutional Adversarial Networks. IEEE transactions on medical imaging, 2019. paper
Khodayar M, Mohammadi S, Khodayar M E, et al. Convolutional Graph Autoencoder: A Generative Deep Neural Network for Probabilistic Spatio-temporal Solar Irradiance Forecasting. IEEE Transactions on Sustainable Energy, 2019. paper
Zhang Q, Chang J, Meng G, et al. Learning graph structure via graph convolutional networks. Pattern Recognition, 2019. paper
Xuan P, Pan S, Zhang T, et al. Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations. Cells, 2019. paper
Sun M, Zhao S, Gilvary C, et al. Graph convolutional networks for computational drug development and discovery. Briefings in bioinformatics, 2019. paper
Spier N, Nekolla S, Rupprecht C, et al. Classification of Polar Maps from Cardiac Perfusion Imaging with Graph-Convolutional Neural Networks. Scientific reports, 2019. paper
Heyuan Shi, et al. Hypergraph-Induced Convolutional Networks for Visual Classification. IEEE Transactions on Neural Networks and Learning Systems, 2019. paper
S.Pan, et al. Learning Graph Embedding With Adversarial Training Methods. IEEE Transactions on Cybernetics, 2019. paper
D. Grattarola, et al. Change Detection in Graph Streams by Learning Graph Embeddings on Constant-Curvature Manifolds. IEEE Transactions on Neural Networks and Learning Systems. 2019. paper
Kan Guo, et al. Optimized Graph Convolution Recurrent Neural Network for Traffic Prediction. IEEE Transactions on Intelligent Transportation Systems. 2020. paper
Ruiz L, et al. Invariance-preserving localized activation functions for graph neural networks. IEEE Transactions on Signal Processing, 2020. paper
Li J, et al. Neural Inductive Matrix Completion with Graph Convolutional Networks for miRNA-disease Association Prediction. Bioinformatics, 2020. paper
Bingzhi Chen, et al. Label Co-occurrence Learning with Graph Convolutional Networks for Multi-label Chest X-ray Image Classification. IEEE Journal of Biomedical and Health Informatics, 2020. paper
Kunjin Chen, et al. Fault Location in Power Distribution Systems via Deep Graph Convolutional Networks. IEEE Journal on Selected Areas in Communications, 2020. paper
Manessi, Franco, et al. Dynamic graph convolutional networks. Pattern Recognition, 2020. paper
Jiang X, Zhu R, Li S, et al. Co-embedding of Nodes and Edges with Graph Neural Networks. IEEE Transactions on Pattern Analysis and Machine Intelligence. paper
Wang Z, Ji S. Second-order pooling for graph neural networks. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2020. paper
Indro Spinelli, et al. Adaptive Propagation Graph Convolutional Network. IEEE Transactions on Neural Networks and Learning Systems, 2020. paper
Zhou Fan, et al. Reinforced Spatiotemporal Attentive Graph Neural Networks for Traffic Forecasting. IEEE Internet of Things Journal, 2020. paper
Wang S H, et al. Covid-19 classification by FGCNet with deep feature fusion from graph convolutional network and convolutional neural network. Information Fusion, 2020. paper
Ruiz, Luana et al. Gated Graph Recurrent Neural Networks, IEEE Transactions on Signal Processing. paper
Gama, Fernando et al. Stability Properties of Graph Neural Networks, IEEE Transactions on Signal Processing. paper
He, Xin et al. MV-GNN: Multi-View Graph Neural Network for Compression Artifacts Reduction, IEEE Transactions on Image Processing. paper
Conference papers:
Duvenaud D, Maclaurin D, Aguilera-Iparraguirre J, et al. Convolutional networks on graphs for learning molecular fingerprints, NeurIPS(NIPS) 2015. paper. code.
M. Niepert, M. Ahmed, K. Kutzkov, Learning Convolutional Neural Networks for Graphs, ICML 2016. paper.
S. Cao, W. Lu, Q. Xu, Deep neural networks for learning graph representations, AAAI 2016. paper.
M. Defferrard, X. Bresson, P. Vandergheynst, Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering, NeurIPS(NIPS) 2016. paper. code.
T.N. Kipf, M. Welling, Semi-Supervised Classification with Graph Convolutional Networks, ICLR 2017. paper. code.
A. Fout, B. Shariat, J. Byrd, A. Benhur, Protein Interface Prediction using Graph Convolutional Networks, NeurIPS(NIPS) 2017. paper.
Monti F, Bronstein M, Bresson X. Geometric matrix completion with recurrent multi-graph neural networks, NeurIPS(NIPS) 2017. paper.
Simonovsky M, Komodakis N. Dynamic edgeconditioned filters in convolutional neural networks on graphs, CVPR. 2017. paper
R. Li, S. Wang, F. Zhu, J. Huang, Adaptive Graph Convolutional Neural Networks, AAAI 2018. paper
J. You, B. Liu, R. Ying, V. Pande, J. Leskovec, Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation, NeurIPS(NIPS) 2018. paper.
C. Zhuang, Q. Ma, Dual Graph Convolutional Networks for Graph-Based Semi-Supervised Classification, WWW 2018. paper
H. Gao, Z. Wang, S. Ji, Large-Scale Learnable Graph Convolutional Networks, KDD 2018. paper
D. Zügner, A. Akbarnejad, S. Günnemann, Adversarial Attacks on Neural Networks for Graph Data, KDD 2018. paper
Ying R , He R , Chen K , et al. Graph Convolutional Neural Networks for Web-Scale Recommender Systems. KDD 2018. paper
P. Veličković, G. Cucurull, A. Casanova, A. Romero, P. Liò, Y. Bengio, Graph Attention Networks, ICLR, 2018. paper
Beck, Daniel Edward Robert, Gholamreza Haffari and Trevor Cohn. Graph-to-Sequence Learning using Gated Graph Neural Networks. ACL 2018. paper
Yu B, Yin H, Zhu Z. Spatio-temporal graph convolutional networks: A deep learning framework for traffic forecasting. IJCAI 2018. paper
Chen J , Zhu J , Song L . Stochastic Training of Graph Convolutional Networks with Variance Reduction. ICML 2018. paper
Gusi Te, Wei Hu, Amin Zheng, Zongming Guo, RGCNN: Regularized Graph CNN for Point Cloud Segmentation. ACM Multimedia 2018. paper, code,
Talukdar, Partha, Shikhar Vashishth, Shib Sankar Dasgupta and Swayambhu Nath Ray. Dating Documents using Graph Convolution Networks. ACL 2018. paper, code
Sanchez-Gonzalez A , Heess N , Springenberg J T , et al. Graph networks as learnable physics engines for inference and control. ICML 2018. paper
Muhan Zhang, Yixin Chen. Link Prediction Based on Graph Neural Networks. NeurIPS(NIPS) 2018. paper
Chen, Jie, Tengfei Ma, and Cao Xiao. FastGCN: Fast Learning with Graph Convolutional Networks via Importance Sampling. ICLR 2018. paper
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Open source platform on GNN
Deep Graph Library（DGL)
DGL is developed and maintained by New York University, New York University Shanghai, AWS Shanghai Research Institute and AWS MXNet Science Team.
Initiation time: 2018.
Source: URL, github
NGra
NGra is developed and maintained by Peking University and Microsoft Asia Research Institute.
Initiation time:2018
Source: pdf
Graph_nets
Graph_nets is developed and maintained by DeepMind, Google Corp.
Initiation time:2018
Source: github
Euler
Euler is developed and maintained by Alimama, which belongs to Alibaba Group.
Initiation time:2019
Source: github
PyTorch Geometric
PyTorch Geometric is developed and maintained by TU Dortmund University, Germany.
Initiation time:2019
Source: github paper
PyTorch-BigGraph（PBG）
PBG is developed and maintained by Facebook AI Research.
Initiation time:2019
Source: github paper
Angel
Angel is developed and maintained by Tencent Inc.
Initiation time:2019
Source: github
Plato
Plato is developed and maintained by Tencent Inc.
Initiation time:2019
Source: github
PGL
PGL is developed and maintained by Baidu Inc.
Initiation time:2019
Source: github
OGB
Open Graph Benchmark(OGB) is developed and maintained by Standford University.
Initiation time:2019
Source: github
Benchmarking GNNs
Benchmarking GNNs is developed and maintained by Nanyang Technological University.
Initiation time:2020
Source: github
Graph-Learn
Graph-Learn is developed and maintained by Alibaba Group.
Initiation time:2020
Source: github
AutoGL (Auto Graph Learning) New
AutoGL is developed and maintained by Tsinghua University.
Initiation time:2020
Source: github
Appetizer for you：Art Exhibition in the Ultra-High Dimensional Network/Graph Structured Space
